CHASM source

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(CHASM Source Code)
(PARF Source Code)
 
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The source code for our softwares are available below.
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The CHASM source code is bundled together with a custom copy of [http://code.google.com/p/parf/ PARF], which it depends on to generate the CHASM scores.
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The CHASM source code is bundled together with a custom copy of [http://waffles.sourceforge.net/ Waffles], which it depends on to generate the CHASM scores.
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== PARF Source Code ==
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The PARF Source Code can be downloaded  [http://karchinlab.org/chasmdl/PARF.tar.gz here]
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Our binaries are compiled using [http://www.pyinstaller.org/ pyinstaller 1.4] and python 2.6.2. The compiling machine must have MySQLdb installed.
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== Older versions of CHASM ==
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For previous versions of the CHASM source code, please contact us at chasm-users@lists.johnshopkins.edu
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<!--  Support older versions of CHASM?
== CHASM Source Code ==
== CHASM Source Code ==
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The CHASM Source Code can be downloaded here.
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The CHASM Source Code can be downloaded [http://karchinlab.org/chasmdl/CHASMSRC.tar.gz here].
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(MD5 Checksum: 785b6a8ade5b65fc87e2c3ae0a8d54c8)
Please note that CHASM classifiers depends on a custom version of [http://waffles.sourceforge.net/ Waffles], which is distributed under [http://www.gnu.org/licenses/lgpl.html LGPL]. The source code for the modified Waffles is included in a subdirectory in this download. Everything in that subdirectory is distributed under LGPL rather than the JHU Licence which applies to the components which consists of CHASM itself.
Please note that CHASM classifiers depends on a custom version of [http://waffles.sourceforge.net/ Waffles], which is distributed under [http://www.gnu.org/licenses/lgpl.html LGPL]. The source code for the modified Waffles is included in a subdirectory in this download. Everything in that subdirectory is distributed under LGPL rather than the JHU Licence which applies to the components which consists of CHASM itself.
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== SNV-Box Source Code ==
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[Last updated 2012/01/25]
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== SNVBox Source Code ==
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The SNVBox Source Code can be downloaded [http://karchinlab.org/chasmdl/SNVBOXSRC.tar.gz here].
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(MD5 Checksum: d1ffa44b1d4a57c8d5598e4b32a1cad1 )
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The SNV-Box Source Code can be downloaded here.
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[Last updated 2012/01/25] -->

Latest revision as of 21:45, 13 February 2013

The CHASM source code is bundled together with a custom copy of PARF, which it depends on to generate the CHASM scores.

PARF Source Code

The PARF Source Code can be downloaded here

Older versions of CHASM

For previous versions of the CHASM source code, please contact us at chasm-users@lists.johnshopkins.edu


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