Useful scripts

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(Created page with "'''Task:''' Use SNVBox to identify the longest coding transcript for a gene, given HUGO identifier<br> https://gist.github.com/ctokheim/18363041037e375f411c#file-longest_snvbox_t...")
 
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'''Task:''' Use SNVBox to identify the longest coding transcript for a gene, given HUGO identifier<br>
'''Task:''' Use SNVBox to identify the longest coding transcript for a gene, given HUGO identifier<br>
https://gist.github.com/ctokheim/18363041037e375f411c#file-longest_snvbox_tx-sql<br>
https://gist.github.com/ctokheim/18363041037e375f411c#file-longest_snvbox_tx-sql<br>
 +
'''Dependencies:'''  SNVBox installed on your local system<br>
 +
'''Usage:''' mysql [options] < longest_snvbox_tx.sql > output.txt<br>
 +
'''NOTE:''' Change your_snvbox_db to the name of the SNVBox mysql database on your system<br>
'''Contributor:''' Collin Tokheim <br>
'''Contributor:''' Collin Tokheim <br>
'''Date:''' June 20, 2014<br><br>
'''Date:''' June 20, 2014<br><br>

Latest revision as of 20:35, 20 June 2014

Task: Use SNVBox to identify the longest coding transcript for a gene, given HUGO identifier
https://gist.github.com/ctokheim/18363041037e375f411c#file-longest_snvbox_tx-sql
Dependencies: SNVBox installed on your local system
Usage: mysql [options] < longest_snvbox_tx.sql > output.txt
NOTE: Change your_snvbox_db to the name of the SNVBox mysql database on your system
Contributor: Collin Tokheim
Date: June 20, 2014

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